PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.197550.1
Common NameCsa_1G009580, LOC101213180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 591aa    MW: 63981.8 Da    PI: 6.7927
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.197550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.66.8e-30267326159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+rs +d +++++tYeg+Hnh+
  Cucsa.197550.1 267 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGApTCPVRKQVQRSVDDISILITTYEGTHNHP 326
                     58**************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30253328IPR003657WRKY domain
SuperFamilySSF1182901.11E-26260328IPR003657WRKY domain
PROSITE profilePS5081128.357262328IPR003657WRKY domain
SMARTSM007741.4E-35267327IPR003657WRKY domain
PfamPF031062.2E-26268326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEAQQALATI DDDRVQSTGE GDDKQASPNP KQHIHLKVPS MGDLEKPSME NLSVPSASNS  60
ITWKEEDDEQ RHEERMKRTK VEMREVKEEN ERLKKYLDEI MKDYETLKRK FHEIKNNHDD  120
QIREEGKKST QTSGSTINNN NNDNDDDHQV EAEVDDMVSL RLGSRFSTHH QNKNTSSSSL  180
SLTNKILDLK QDYVIQTPST IDHSIHSPTH SEPKDQEEAG QTTWPPSKMP KPGGLPSPAT  240
GEDEVSQQSP PKKARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTGAPTCP  300
VRKQVQRSVD DISILITTYE GTHNHPLPVS AMAMASTTSA AASMLLSGPS SSTSSQPGLN  360
HSFTAPATAA NLHGMNMYLS NNTSSKQFYL PNSSMLSSSL NHPTITLDLT SNPPSTSSSS  420
PFHKIPLINN NNYPPKYPFT NLDFASSQPN FMSWNNNNNA YSNITKNNAI IGMGSDFAKQ  480
LPLHTNIYQA CLQQLSKPST TPQPPALPDT IAAATKAITS DPSFQSALAA ALSSIIGGGE  540
TGPSVSSLVV GGGGGGGQGS MGFEAAKSLT CSTSKSTPSS SPGDSRDNGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20254328174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659995.10.0PREDICTED: probable WRKY transcription factor 61 isoform X1
TrEMBLA0A0A0LRM60.0A0A0A0LRM6_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-54WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]